Deep‐ultraviolet laser ablation electrospray ionization mass spectrometry

R.O. Lawal, F. Donnarumma, K.K. Murray, Deep-ultraviolet laser ablation electrospray ionization mass spectrometry, J. Mass Spectrom. 54 (2019) 281–287. doi:10.1002/jms.4338.

A 193‐nm wavelength deep ultraviolet laser was used for ambient laser ablation
electrospray ionization mass spectrometry of biological samples. A pulsed ArF excimer
laser was used to ablate solid samples, and the resulting plume of the desorbed material
merged with charged electrospray droplets to form ions that were detected with a
quadrupole time‐of‐flight mass spectrometer. Solutions containing peptide and protein
standards up to 66‐kDa molecular weight were deposited on a metal target,
dried, and analyzed. No fragmentation was observed from peptides and proteins as
well as from the more easily fragmented vitamin B12 molecule. The mass spectra
contained peaks from multiply charged ions that were identical to conventional
electrospray. Deep UV laser ablation of tissue allowed detection of lipids from
untreated tissue. The mechanism of ionization is postulated to involve absorption of
laser energy by a fraction of the analyte molecules that act as a sacrificial matrix or
by residual water in the sample.

RNA Sampling from Tissue Sections using Infrared Laser Ablation

RNA Sampling from Tissue Sections using Infrared Laser Ablation
RNA Sampling from Tissue Sections using Infrared Laser Ablation
Analytica Chimica Acta
Kelin Wang, Fabrizio Donnarumma, Scott W. Herke, Chao Dong, Patrick F. Herke, Kermit K. Murray
DOI:10.1016/j.aca.2019.02.054

Abstract
RNA was obtained from discrete locations of frozen rat brain tissue sections through infrared (IR) laser ablation using a 3-μm wavelength in transmission geometry. The ablated plume was captured in a microcentrifuge tube containing RNAse-free buffer and processed using a commercial RNA purification kit. RNA transfer efficiency and integrity were evaluated based on automated electrophoresis in microfluidic chips. Reproducible IR-laser ablation of intact RNA was demonstrated with purified RNA at laser fluences of 3-5 kJ/m2 (72±12% transfer efficiency) and with tissue sections at a laser fluence of 13 kJ/m2 (79±14% transfer efficiency); laser energies were attenuated ∼20% by the soda-lime glass slides used to support the samples. RNA integrity from tissue ablation was >90% of its original RIN value (∼7) and the purified RNA was sufficiently intact for conversion to cDNA and subsequent qPCR assay.

Infrared laser ablation sampling coupled with data independent high resolution UPLC-IM-MS/MS for tissue analysis

Infrared laser ablation sampling coupled with data independent high resolution UPLC-IM-MS/MS for tissue analysis
M. E. Pettit, F. Donnarumma, K. K. Murray, & T. Solouki, Analytica Chimica Acta in Press, DOI: 10.1016/j.aca.2018.06.066

Infrared laser ablation sampling coupled with data independent high resolution UPLC-IM-MS/MS for tissue analysis DOI: 10.1016/j.aca.2018.06.066
Infrared laser ablation sampling coupled with data independent high resolution UPLC-IM-MS/MS for tissue analysis

Infrared laser ablation microsampling was used with data-dependent acquisition (DDA) and ion mobility-enhanced data-independent acquisition (HDMSE) for mass spectrometry based bottom-up proteomics analysis of rat brain tissue. Results from HDMSE and DDA analyses of the 12 laser ablation sampled tissue sections showed that HDMSE consistently identified approximately seven times more peptides and four times more proteins than DDA. To evaluate the impact of ultra-performance liquid chromatography (UPLC) peak congestion on HDMSE and DDA analysis, whole tissue digests from rat brain were analyzed at six different UPLC separation times. Analogous to results from laser ablated samples, HDMSE analyses of whole tissue digests yielded about four times more proteins identified than DDA for all six UPLC separation times.

Infrared laser ablation and capture of enzymes with conserved activity

Wang, K., Donnarumma, F., Baldone, M. D., & Murray, K. K. Infrared laser ablation and capture of enzymes with conserved activity. Anal Chim Acta, 1027, 41–46 (2018).

Graphical abstract: Infrared laser ablation and capture of enzymes with conserved activity
Graphical abstract: Infrared laser ablation and capture of enzymes with conserved activity

Abstract

Infrared (IR) laser ablation at 3 μm wavelength was used to extract enzymes from tissue and quantitatively determine their activity. Experiments were conducted with trypsin, which was ablated, captured and then used to digest bovine serum albumin (BSA). BSA digests were evaluated using matrix-assisted laser desorption ionization (MALDI) mass spectrometry (MS) and sequence coverage of 59% was achieved. Quantification was performed using trypsin and catalase standards and rat brain tissue by fluorescence spectroscopy. Both enzymes were reproducibly transferred with an efficiency of 75 ± 8% at laser fluences between 10 and 30 kJ/m2. Trypsin retained 37 ± 2% of its activity and catalase retained 50 ± 7%. The activity of catalase from tissue was tested using three consecutive 50 μm thick rat brain sections. Two 4 mm2 regions were ablated and captured from the cortex and cerebellum regions. The absolute catalase concentration in the two regions was consistent with previously published data, demonstrating transfer of intact enzymes from tissue.

Pulsed Valve Matrix-assisted Ionization

DOI: 10.1039/C7AN00489C

PV MAI Schematic
Pulsed valve matrix assisted ionization schematic.

We have developed a new ionization approach for matrix-assisted ionization with high temporal resolution using an electrically actuated pulsed valve. Matrix and analyte samples are deposited on a thin metal foil and placed at the inlet of an ambient ionization mass spectrometer. When the pulsed valve is actuated, a short puff of high pressure gas impinges on the foil and ejects particulate from the sample on the opposite side. Highly charged ions are formed from the particles at the mass spectrometer inlet. Using this source, multiply charged protein ions are produced within a selectable 4 second time window.

High Resolution Laser Mass Spectrometry Bioimaging

K. K. Murray, , C. A. Seneviratne, and S. Ghorai, “High Resolution Laser Mass Spectrometry Bioimaging” Methods 104 (2016) 118–126; doi:10.1016/j.ymeth.2016.03.002

Mass spectrometry imaging (MSI) was introduced more than five decades ago with secondary ion mass spectrometry (SIMS) and a decade later with laser desorption/ionization (LDI) mass spectrometry (MS). Large biomolecule imaging by matrix-assisted laser desorption/ionization (MALDI) was developed in the 1990s and ambient laser MS a decade ago. Although SIMS has been capable of imaging with a moderate mass range at sub-micrometer lateral resolution from its inception, laser MS requires additional effort to achieve a lateral resolution of 10 lm or below which is required to image at the size scale of single mammalian cells. This review covers untargeted large biomolecule MSI using lasers for desorption/ionization or laser desorption and post-ionization. These methods include laser microprobe (LDI) MSI, MALDI MSI, laser ambient and atmospheric pressure MSI, and near-field laser ablation MS. Novel approaches to improving lateral resolution are discussed, including oversampling, beam shaping, transmission geometry, reflective and through-hole objectives, microscope mode, and near-field optics.

http://mass-spec.lsu.edu/documents/murray_2016.pdf

Laser Ablation Sample Transfer for Localized LC-MS/MS Proteomic Analysis of Tissue

F.Donnarumma and K. K. Murray, Laser ablation sample transfer for localized LC-MS/MS proteomic analysis of tissue, J Mass Spectrom, 2016 51 261-268.

Laser Ablation Sample Transfer for Localized LC-MS/MS Proteomic Analysis of Tissue. J. Mass Spectrom. 2016, 51, 261
Donnarumma, F.; Murray, K. K. Laser Ablation Sample Transfer for Localized LC-MS/MS Proteomic Analysis of Tissue. J. Mass Spectrom. 2016, 51, 261–268.

We have developed a mid-infrared laser ablation sampling technique for nano-flow liquid chromatography coupled with tandem mass spectrometry proteomic profiling of discrete regions from biological samples. Laser ablation performed in transmission geometry was used to transfer material from 50-μm thick tissue sections mounted on a glass microscope slide to a capturing solvent. Captured samples were processed using filter-aided sample preparation and enzymatically digested to produce tryptic peptides for data-dependent analysis with an ion trap mass spectrometer. Comparison with ultraviolet laser capture microdissec- tion from neighboring regions on the same tissue section revealed that infrared laser ablation transfer has higher reproducibility between samples from different consecutive sections. Both techniques allowed for proteomics investigation of different orga- nelles without the addition of surfactants.

GUMBOS matrices of variable hydrophobicity for matrix-assisted laser desorption/ionization mass spectrometry

Al Ghafly, Siraj, Das, Regmi, Magut, Galpothdeniya, Murray, Warner, Rapid Commun. Mass Spectrom. 2014, 28, 2307; DOI: 10.1002/rcm.7027.

RATIONALE

Detection of hydrophobic peptides remains a major obstacle for matrix-assisted laser desorption/ionization mass spectrometry (MALDI-MS). This stems from the fact that most matrices for MALDI are hydrophilic and therefore have low affinities for hydrophobic peptides. Herein, 1-aminopyrene (AP) and AP-derived group of uniform materials based on organic salts (GUMBOS) as novel matrices for MALDI-MS analyses of peptides were investigated for hydrophobic and hydrophilic peptides.

METHODS

A number of solid-phase AP-based GUMBOS are synthesized with variable hydrophobicity simply by changing the counterions. Structures were confirmed by use of 1H NMR and electrospray ionization mass spectrometry (ESI-MS). 1-Octanol/water partition coefficients (Ko/w) were used to measure the hydrophobicity of the matrices. A dried-droplet method was used for sample preparation. All spectra were obtained using a MALDI-TOF mass spectrometer in positive ion reflectron mode.

RESULTS

A series of AP-based GUMBOS was synthesized including [AP][chloride] ([AP][Cl]), [AP][ascorbate] ([AP][Asc]) and [AP][bis(trifluoromethane)sulfonimide] ([AP][NTf2]). The relative hydrophobicities of these compounds and α-cyano-4-hydroxycinnamic acid (CHCA, a common MALDI matrix) indicated that AP-based GUMBOS can be tuned to be much more hydrophobic than CHCA. A clear trend is observed between the signal intensities of hydrophobic peptides and hydrophobicity of the matrix.

CONCLUSIONS

MALDI matrices of GUMBOS with tunable hydrophobicities are easily obtained simply by varying the counterion. We have found that hydrophobic matrix materials are very effective for MALDI determination of hydrophobic peptides and, similarly, the more hydrophilic peptides displayed greater intensity in the more hydrophilic matrix.